Eraya MSI Classifier

4basecare

Eraya · MSI Classifier

Gen5 Binary MANTIS

pure binary MSI-H vs MSS run using H-optimus-1 bags; MANTIS >= 0.65 is MSI-H, otherwise MSS

idle

Phase

not running

0/611

TFRecords

0% complete

Raw SVS

0 cleaned

Cleanup

5-slide batches

- GB

VM Storage

-% used

0/611

Feature Bags

0% live - h-optimus-1

Bag Speed

calculating ETA

0/50

Folds

5 seeds x 10 folds

Checkpoints

best_valid.pth

1024/1024

Bag / Val Bag

max context

Batch

VRAM-safe

Epochs

per fold

Parallel

6 CPU workers

Live Gen5 Training Scores

Updates from history.csv and fold_metrics.json every 3 seconds. Metrics appear as each fold exports predictions.

Training ETA

calculating

0/2000

Epoch Progress

Current Fold

waiting

Macro AUROC

0 metric folds

Macro AUPRC

one-vs-rest

Accuracy

completed folds

F1 Macro

3-class mean

Log Loss

lower better

-/-

Brier / ECE

calibration

Live Epoch History

Train loss, validation loss, and multiclass AUROC from the latest fold histories.

Fold Scores And Loss

Latest 20 active/completed folds, using best AUROC, best AUPRC, and best validation loss when available.

Seed	Fold	Status	Epochs	Best AUROC	Best AUPRC	Best Loss	F1 Macro

All Completed-Fold Metrics

Macro AUROC	-
Macro AUPRC	-
Accuracy	-
Balanced Accuracy	-
F1 Macro	-
F1 Weighted	-
Log Loss	-
Brier Multiclass	-
ECE Multiclass	-
MSI-H AUROC / AUPRC	- / -
MSI-L AUROC / AUPRC	- / -
MSS AUROC / AUPRC	- / -

Pooled Confusion Matrix

Rows are true class, columns are predicted class, pooled from completed fold metrics.

Waiting for fold_metrics.json

Best Thresholds Vs Default 0.50

AUROC/AUPRC do not change with threshold. This shows best operating threshold, F1 gain, and ROC/PRC operating points vs default 0.50.

Threshold Summary

Class	Metric	Best T	Best	Default	Delta	ROC best	ROC def	PR best	PR def
Waiting for threshold_sweep.csv

Recent Fold Best Threshold Records

Seed	Fold	Class	Metric	Best T	Best	Default	Delta	ROC best	ROC def	PR best	PR def	TP/TN/FP/FN	Def TP/TN/FP/FN
Waiting for completed folds to export threshold records.

Live TFRecord Progress

0/611 · 0%

Raw SVS left: 0

Raw deleted: 0

Cleanup batches: 0

Policy: 5 at a time

Live H-optimus-1 Bag Progress

0/611 actual · 0% live

Done: 0

In flight: 0.00

Speed: calculating

ETA: calculating

Remaining: 611

Last bag age: -

Avg sec/bag: -

Newest bag: -

Live VM Storage

- GB free

Used: - GB

Total: - GB

Used pct: -%

Path: /home/pardeep/gen5

Gen5 Analytics And Config

Cohort slides	611
Classes	MSI-H / MSI-L / MSS
Extractor	H-optimus-1
QC	otsu
Raw SVS cleanup	delete after matching TFRecords are ready
Bag / val bag	1024 / 1024
Batch / epochs	1 / 40
GPU folds / CPU workers	1 / 6

Macro AUROC	-
Macro AUPRC	-
Accuracy	-
Balanced Accuracy	-
F1 Macro	-
F1 Weighted	-
Log Loss	-
Brier Multiclass	-
ECE Multiclass	-

Metrics will appear after the first completed fold exports predictions.parquet and fold_metrics.json.

Live Log

/home/pardeep/gen5/logs/train_binary_mantis065.log

No Gen5 log yet.

4BaseCare · Eraya · gen3-msi-run-001 · H-Optimus-0 + bistro.transformer · 265 training slides · 1360 unseen cohort